BIO-TECH Talks October 17, 2024
“UWBC Transcriptomic Pipeline- Unlocking the Secrets of Gene Expression from Bulk to Spatial Transcriptomics”
Presented by Sandra Splinter BonDurant, MS, Director, UWBC Gene Expression Center & Anthony Veltri, Ph.D., Bioinformatician, UWBC Bioinformatics Resource Center
Office Hours with 10X FAS, Nicole Jaymalin, Thursday,October 24
Location and hours TBD
Gene Expression Center
Contact Information
- Sandra Splinter BonDurant, MS
Director
2120 Biotechnology Center
425 Henry Mall Madison WI 53706
Email: gecinfo@biotech.wisc.edu
The Gene Expression Center provides cost-effective, cutting edge transcriptomic (bulk, single cell & spatial transcriptomic) and large scale genotyping/methylation services to the University of Wisconsin campus as well as colleagues at public and private institutions. Our service options include:
- Bulk RNA-seq library preparation, in both short-read (NEB; Illumina; Takara) and long-read (PacBio Iso-Seq; Oxford Nanopore) formats
- Single cell RNA-seq and ATAC-seq library preparation for 10X Genomics (see our Guide to Getting Started with 10X Genomics) & Parse Biosciences Evercode
- Spatial transcriptomics (10X Genomics Visium; NanoString GeoMx) in collaboration with the UW Madison TRIP lab
- RNA extraction
- RNA QC
- Array-based genotyping, GWAS, and methylation assays (Illumina iScan system)
IMPORTANT: Deliverable data will be deleted from our systems 60 days after it is made available to download.
A visible measure of a core’s impact is made through acknowledgement of service usage in abstracts/talks/publications. Please consider including the following statement,
The author(s) utilized the University of Wisconsin – Madison Biotechnology Center Gene Expression Center (Research Resource Identifier – RRID:SCR_017757) for XXXX.
If you publish data generated via GEC services, please contact us at gecinfo@biotech.wisc.edu so we can list the publication on our website!
All data and services provided by the University of Wisconsin Biotechnology Center Gene Expression Center are intended for research purposes only. Services are not intended nor certified for diagnostic or clinical use.