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Acknowledgments The UWBC provides access to complex genomic technologies and offers guidance in experimental design. One measure of our impact on the UW-Madison research community is the number of publications we support. Thus, we request that any data generated using UWBC resources, which are presented in a publication, grant proposal, poster, or presentation, be formally acknowledged. Payment for UWBC services does not preclude the recognition of resources used or intellectual contribution to a project.RRID CellPress and Nature Protocols . The SciCrunch portal is a central location for finding RRIDs for reagents, tools, materials, and core facilities.The UWBC Gene Expression Core Facility RRID # is SCR _017757
The following is an incomplete list of publications acknowledging GEC support. If you see your publication(s) missing from this list, please notify us at gecinfo@biotech.wisc.edu. Thank you.
Al-Adra D et al. Single cell RNA-sequencing identifies the effect of Normothermic ex vivo liver perfusion on liver-resident T cells.
Wexler AC et al. Cardiac overexpression of mitochondrial SUR2A splice variants impairs cardiac function and worsens myocardial ischemia reperfusion injury in female mice.
Jennings H et al. Normothermic liver perfusion derived extracellular vesicles have concentration-dependent immunoregulatory properties.
Vinje MA et al. Characterization of a near isogenic barley line with high grain β-amylase activity reveals a separation in the tight co-regulation of B-hordeins (Hor2 ) with endosperm-specific β-amylase (Bmy1 ).
Hou Y et al. Single-cell Transcriptional Landscape of Temporal Neutrophil Response to Burn Wound in Larval Zebrafish.
Vinje MA and Simmons CH. Characterization of barley (Horduem vulgare) lys3 mutants identifies genes under the regulation of the prolamin-box binding transcription factor and elucidates its role in endosperm promoter methylation during grain development.
McLean DT et al. Single-cell RNA sequencing of neurofibromas reveals a tumor microenvironment favorable for neural regeneration and immune suppression in a neurofibromatosis type 1 porcine model.
Dresang LR et al. Comparing transcriptomic profiles from seven cell lines to elucidate liver metastatic potential.
Carlson KN et al. Single-cell RNA sequencing distinguishes dendritic cell subsets in the rat, allowing advanced characterization of the effects of FMS-like tyrosine kinase 3 ligand.
Gallego-Lopez GM et al. Dual Transcriptomics to Determine Gamma Interferon-Independent Host Response to Intestinal Cryptosporidium parvum Infection.
Green CL et al. Sex and genetic background define the metabolic, physiologic, and molecular response to protein restriction.
Carlson KN et al. Interleukin-10 and Transforming Growth Factor-β cytokines decrease immune activation during normothermic ex vivo machine perfusion of the rat liver.
Pak HH et al. Fasting drives the metabolic, molecular and geroprotective effects of a calorie-restricted diet in mice.
Yang GH et al. TCF19 Impacts a Network of Inflammatory and DNA Damage Response Genes in the Pancreatic β-Cell.
Yu D et al. The adverse metabolic effects of branched-chain amino acids are mediated by isoleucine and valine.
Yang H et al. Single-cell RNA sequencing reveals heterogeneity of vascular cells in early stage murine abdominal aortic aneurysm – brief report.
Richardson NE et al. Lifelong restriction of dietary branched-chain amino acids has sex-specific benefits for frailty and lifespan in mice.
Song HW et al. Transcriptomic comparison of human and mouse brain microvessels.
Simonson L et al. Keratin 13 deficiency causes white sponge nevus in mice.
Vera JM et al. Genome-Scale Transcription-Translation Mapping Reveals Features of Zymomonas mobilis Transcription Units and Promoters.
Muchlinski A et al. Diversity and function of terpene synthases in the production of carrot aroma and flavor compounds.
Lee H et al. Beta Cell Dedifferentiation Induced by IRE1α Deletion Prevents Type 1 Diabetes.
Schwartzman JA et al. Acidic pH promotes lipopolysaccharide modification and alters colonization in a bacteria-animal mutualism.
Stebbins MJ et al. Human Pluripotent Stem Cell-Derived Brain Pericyte-Like Cells Induce Blood-Brain Barrier Properties.
Svaren J et al. Schwann cell transcript biomarkers for hereditary neuropathy skin biopsies.
Pak HH et al. The Metabolic Response to a Low Amino Acid Diet is Independent of Diet-Induced Shifts in the Composition of the Gut Microbiome.
Wu MY et al. Systematic Dissection of the Evolutionarily Conserved WetA Developmental Regulator across a Genus of Filamentous Fungi.
Scarborough MJ et al. Metatranscriptomic and Thermodynamic Insights into Medium-Chain Fatty Acid Production Using an Anaerobic Microbiome.
Rytz TC et al. SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 during Heat Stress.
Reinhart JM et al. RNA expression profiling in sulfamethoxazole-treated patients with a range of in vitro lymphocyte cytotoxicity phenotypes.
Ma KH et al. Polycomb repression regulates Schwann cell proliferation and axon regeneration after nerve injury.
McCulley DJ et al. PBX transcription factors drive pulmonary vascular adaptation to birth.
Gladman NP et al. The proteasome stress regulon is controlled by a pair of NAC transcription factors in Arabidopsis.
Saul MC et al. MicroRNA expression is altered in lateral septum across reproductive stages.
Suzuki N et al. ABA Is Required for Plant Acclimation to a Combination of Salt and Heat Stress.
de Sá Rodrigues LC et al. Osteosarcoma tissues and cell lines from patients with differing serum alkaline phosphatase concentrations display minimal differences in gene expression patterns.
Gagnon J et al. Transcriptome wide annotation of eukaryotic RNase III reactivity and degradation signals.
Driessen TM et al. Genes showing altered expression in the medial preoptic area in the highly social maternal phenotype are related to autism and other disorders with social deficits.
Kim EH et al. Bach2 regulates homeostasis of Foxp3+ regulatory T cells and protects against fatal lung disease in mice.
Kawakami-Schulz SV et al. Serum response factor: positive and negative regulation of an epithelial gene expression network in the destrin mutant cornea.
Choi YJ et al. Dual RNA-seq of parasite and host reveals gene expression dynamics during filarial worm-mosquito interactions.
Porras AM et al. Gene expression profiling of valvular interstitial cells in Rapacz familial hypercholesterolemic swine.
Zhao C et al. Addiction and reward-related genes show altered expression in the postpartum nucleus accumbens.
Piccinato CA et al. Estradiol and progesterone exhibit similar patterns of hepatic gene expression regulation in the bovine model.
Esnault S et al. Identification of genes expressed by human airway eosinophils after an in vivo allergen challenge.
Eisinger BE et al. Large scale expression changes of genes related to neuronal signaling and developmental processes found in lateral septum of postpartum outbred mice.
Zhan L et al. Identification of genetic modifiers of TDP-43 neurotoxicity in Drosophila.
Park JJ et al. Cell-specific gene expression in Anabaena variabilis grown phototrophically, mixotrophically, and heterotrophically.
Saul MC et al. A new mouse model for mania shares genetic correlates with human bipolar disorder.
Rose CM et al. Rapid phosphoproteomic and transcriptomic changes in the rhizobia-legume symbiosis.
Kruzel EK et al. Analysis of Cryptococcus neoformans sexual development reveals rewiring of the pheromone-response network by a change in transcription factor identity.
Kim EH et al. Signal integration by Akt regulates CD8 T cell effector and memory differentiation.
Zhao C et al. Gene expression changes in the septum: possible implications for microRNAs in sculpting the maternal brain.
Koivistoinen OM et al. Characterization of the gene cluster for l-rhamnose catabolism in the yeast Scheffersomyces (Pichia) stipitis.
Bochkov YA et al. Rhinovirus-induced modulation of gene expression in bronchial epithelial cells from subjects with asthma.
Wagoner MP et al. The transcription factor REST is lost in aggressive breast cancer.
Metallo CM et al. Human embryonic stem cell-derived keratinocytes exhibit an epidermal transcription program and undergo epithelial morphogenesis in engineered tissue constructs.
Kershner AM and Kimble J. Genome-wide analysis of mRNA targets for Caenorhabditis elegans FBF, a conserved stem cell regulator.
Kitko RD et al. Cytoplasmic acidification and the benzoate transcriptome in Bacillus subtilis.
Alejandro-Osorio AL et al. The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress.
Jeffries TW and Headman Van Vleet JR. Pichia stipitis genomics, transcriptomics, and gene clusters.
Pile LA et al. The SIN3 deacetylase complex represses genes encoding mitochondrial proteins: implications for the regulation of energy metabolism.